Staff Publications

The following reports and articles, written or co-written by Commission staff members, originally appeared in journals, proceedings or report series not produced by the Pacific Salmon Commission.

For more information on any of these publications, contact the PSC Librarian at library@psc.org.


On the Web:

Researchgate

Catherine Michielsens
Yunbo Xie
Merran Hague
Cory Lagasse
Steve Latham
Mike Lapointe
Keith Forrest
Jacqueline Nelitz
Fiona Martens
Maxine Forrest 2

Google Scholar

Catherine Michielsens


Xie, Y., Martens, F. (2014) An Empirical Approach for Estimating the Precision of Hydroacoustic Fish Counts by Systematic Hourly Sampling.  North American Journal of Fisheries Management.  34 (3), 535-545.  Available online.

Xie, Y., Martens, F., Michielsens, C.G.J., Cave J. (2013) Implementation of Stationary Hydroacoustic Sampling Systems to Estimate Salmon Passage in the Lower Fraser River: A final project report to the southern boundary restoration and enhancement fund.

Xie, Y., Michielsens, C.G.J., Martens, F. (2012) Classification of fish and non-fish acoustic tracks using discriminant function analysis.  ICES Journal of Marine Science.  doi:10.1093/icesjms/fsr198.  Available online.

Godbout, L., Wood, C.C., Withler, R.E., Latham, S., Nelson, R.J., Wetzel, L., Barnett-Johnson, R., Grove, M.J., Schmitt, A.K., McKeegan, K.D. (2011) Sockeye salmon (Oncorhynchus nerka) return after an absence of nearly 90 years : a case of revision to anadromy. Can. J. Fish. Aquat. Sci. 68(9): 1590-1602.

Reed, T.E., Schindler, D.E., Hague, M.J., Patterson, D.A., Meir, E, et al. (2011) Time to evolve? Potential evolutionary responses of Fraser River sockeye salmon to climate change and effects on persistence. PLoS ONE 6(6): e20380.

Eliason, E.J., Clark, T.D., Hague, M.J., Hanson, L.M., Gallagher, Z.S., Jeffries, K.M., Gale, M.K., Patterson, D.A., Hinch, S.G., Farrell, A.P. (2011) Differences in thermal tolerance among sockeye salmon populations. Science. 332(6025): 109-112.

Cummings, J.W., Hague, M.J., Peterman, R.J., Patterson, D.A. (2011) The impact of different performance measures on model selection for Fraser River sockeye salmon. North American Journal of Fisheries Management. 31: 323-334.

Hague, M.J., Ferrari, M.R., Miller, J.R., Patterson, D.A., Russell, G.L., Farrell, A.P., Hinch, S.G. (2011) Modelling the future hydroclimatology of the lower Fraser River and its impacts on the spawning migration survival of sockeye salmon. Global Change Biology. 17(1) 87-98

Martins, E.G., Hinch, S.G., Patterson, D.A., Hague, M.J., Cooke, S.J., Miller, K.M., Lapointe, M.F., English, K.K., Farrell, A.P. (2011) Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka). Global Change Biology. 17(1): 99-114.

MacDonald, J.S., Patterson, D.A., Hague, M.J., and Guthrie, I.C. (2010) Modeling the influence of environmental factors on spawning migration mortality for sockeye salmon fisheries management in the Fraser River, British Columbia. Transactions of the American Fisheries Society 139(3): 768-782.

Forrest, K.W, Cave, J.D., Michielsens, C.G.J., Haulena, M. and Smith, D.V. (2009) Evaluation of an electric gradient to deter seal predation on salmon caught in gill-net test fisheries. North American Journal of Fisheries Management 29(4): 885-894.

Vagle, S., Li, D., Boesen, M., Cronkite, G., Xie, Y. (2008) A study to determine the feasibility of hydroacoustic monitoring of migrating sockeye and pink salmon in the marine area.  Southern Boundary Restoration and Enhancement Fund Project Final Report.

Farrell, A.P., Hinch, S.G., Cooke, S.J., Patterson, D.A., Crossin, G.T.,
Lapointe, M., and Mathes, M.T.(2008). Pacific salmon in hot water: applying aerobic scope models and biotelemetry to predict the success of spawning migrations. Physiological and Biochemical Zoology 81(6): 697-708.

Xie, Y., Michielsens, C.G.J., Gray, A.P., Martens, F.J., and Boffey, J.L. (2008). Observations of avoidance reactions of migrating salmon to a mobile survey vessel in a riverine environment. Can. J. Fish. Aquat. Sci. 65: 2178-2190. (PDF version available from NRC Press at http://pubs.nrc-cnrc.gc.ca/)

Michielsens, C.G.J., McAllister, M.K., Kuikka, S., M?tyniemi, S., Romakkaniemi, A., Pakarinen, T., Kalsson, L. and Uusitalo, L. (2008). Combining multiple Bayesian data analyses in a sequential framework for quantitative fisheries stock assessment. Can. J. Fish. Aquat. Sci. 65: 962-974. Available from the PSC

Kulmala, S., Laukkanen, M. and Michielsens,C. (2008). Reconciling economic and biological modeling of migratory fish stocks: optimal management of the Atlantic salmon fishery in the Baltic Sea. Ecological Economics, 64:716-728. Available from the PSC

Haapasaari, P., Michielsens, C.G.J., Karjalainen, T.P., Reinikainen, K. and Kuikka, S. (2007). Management measures and fishers’ commitment to sustainable exploitation: a case study of Atlantic salmon fisheries in the Baltic Sea. ICES J. Mar. Sci. 64: 825-833. Available from the PSC

Clarke, S., McAllister, M.K. Milner-Gulland, E.J., Kirkwood, G.P. Michielsens, C.G.J., Agnew, D.J., Pikitch, E.K., Nakano, H. and Shivji, M.S. (2006). Global estimates of shark catches using trade records from commercial markets. Ecological Letters, 9: 1115-1126. Available from the PSC

Michielsens, C.G.J., Mäntyniemi, S. and Vuorinen, P.J. (2006). Estimation of annual mortality rates caused by Early Mortality Syndromes (EMS) and their impact on salmonid stock-recruit relationships. Can. J. Fish. Aquat. Sci. 63: 1968-1981.

Michielsens, C.G.J., McAllister, M.K., Kuikka, S., Pakarinen, T., Karlsson, L., Romakkaniemi, A., Perä I. and Mäntyniemi, S. (2006) Bayesian state-space mark-recapture model to estimate fishing mortality rates within a mixed stock fishery. Can. J. Fish. Aquat. Sci. 63:321-334.

Clarke, S., McAllister, M. and Michielsens, C. (2004) Estimates of shark species composition and numbers associated with the shark fin trade based on Hong Kong auction data. J. North-West Atlantic Fish. Sci. 35.

Michielsens, C.G.J. and McAllister, M.K. (2004) A Bayesian hierarchical analysis of stock-recruit data: quantifying structural and parameter uncertainties. Can. J. Fish. Aquat. Sci. 61: 1032-1047.

Cronkite, G.M.W., Enzenhoffer, H.J., and Gray, A.P. (2004) Split-beam sonar observations of targets as an aid in the interpretation of anomalies encountered while monitoring migrating adult salmon in rivers. Aquat. Living Resour. 17: 1-12.

Cooke, S.J., Hinch, S.G., Farrell, A.P., Lapointe, M.F., Jones, S.R.M., Macdonald, J.S., Patterson, D.A., Healey, M.C., Van Der Kraak, G. (2004) Abnormal migration timing and high en route mortality of sockeye salmon in the Fraser River, British Columbia. Fisheries 29(2): 22-33.

Chen D.G., Xie, Y., Mulligan, T.J., and MacLennan, D.N. (2004) Optimal partition of sampling effort between observations of fish density and migration speed for a riverine hydroacoustic duration-in-beam method. Fish. Res. 67: 275-282.

Beacham, T.D., Lapointe, M., Candy, J.R., Miller, K.M., Withler, R.E. (2004) DNA in action : rapid application of DNA variation to sockeye salmon fisheries management. Conservation Genetics 5: 411-416.

Lapointe, M.F., Cooke, S.J., Hinch, S.G., Farrell, A.P., Jones, S., Macdonald, S., Patterson, D., Healey, M.C., and Van Der Kraak, G. (2003). Late-run sockeye salmon in the Fraser River, British Columbia are experiencing early upstream migration and unusually high rates of mortality: what is going on? In Proceedings of the 2003 Georgia Basin/Puget Sound Research Conference p.p. 1-14.

Beacham, T.D., Lapointe, M., Candy, J.R., McIntosh, B., MacConnachie, C., Tabata, A., Kaukinen, K., Deng, L., Miller, K.M., Withler, R. (2004) Stock identification of Fraser sockeye salmon using microsatellites and major histocompatibility complex variation. Transactions of the American Fisheries Society 133: 1117-1137.

Schubert, N.D., Beacham, T.D., Cass, A.J., Cone, T.E., Fanos, B.P., Foy, M., Gable, J.H., Grout, J.A., Hume, J.M.B., Johnson, M., Morton, K.F., Shortreed, K.F., Staley, M.J., and Withler, R.E. (2002). Status of Cultus Lake sockeye salmon (Oncorhynchus nerka). Canadian Science Advisory Secretariat Res. Doc. 2002/064.

Michielsens, C.G.J., Lorenzen, K., Philips, M. and Gauthier, R. (2002). Asian carp farming systems: Towards a typology and increased resource use efficiency. Aquaculture Research, 33: 403-413. Available from the PSC

Cronkite, G.M.W., Y. Xie, and A.P. Gray. (2000). Active tracking sonar study of salmon migration behaviour at Mission, British Columbia, 1998. Can. Man. Rep. Fish. Aquat. Sci. 2506. 47 p.

Hedgepeth, J.B., D. Fuhriman, G.M. W. Cronkite, Y. Xie, and T.J. Mulligan. (2000). A tracking transducer for following fish movement in shallow water and at close range. Aquat. Living Resour. 13(5): 263-408.

Xie, Y. (2000). A range-dependent echo-association algorithm and its application in split-beam sonar tracking of migratory salmon in the Fraser River watershed. IEEE J. Oceanic Eng. 25(3): 387-398.

Macdonald, J.S., I.V. Williams, and J.C. Woodey. (2000). The effects of in-river conditions on migrating sockeye salmon (Oncorhynchus nerka). In J.S. Macdonald (ed.) Mortality during the migration of Fraser River sockeye salmon (Oncorhynchus nerka): a study of the effect of ocean and river environmental conditions in 1997. Can. Tech. Rep. Fish. Aguat. Sci. 2315. pp. 39-57.

Woodey, J.C. (2000). International management of Fraser River sockeye salmon. In E.E. Knudsen et al. (eds.) Sustainable fisheries management: Pacific salmon. CRC Press. pp. 207-218.

Peterman, R.M., B.J. Pyper, M.F. Lapointe, and C.J. Walters. (1999). Patterns of covariation in length and age at maturity of British Columbia and Alaska sockeye salmon (Oncorhynchus nerka) stocks. Can. J. Fish. Aquat. Sci. 56:1046-1057. available from the PSC

McKinnell, S.M., C.C. Wood, M.F. Lapointe, J.C. Woodey, K.E. Kostow, J. Nelson, and K.D. Hyatt. (1999). Reviewing the evidence that adult sockeye salmon strayed from the Fraser River and spawned in other rivers in 1997. PICES Scient. Rep. 10, pp. 73-75.

Shaklee, J.B., T.D. Beacham, L. Seeb, and B.A. White. (1999). Managing fisheries using genetic data: case studies from four species of Pacific salmon. Fish. Research. 43:45-78.

Peterman, R.M., B.J. Pyper, M.F. Lapointe, and M.D. Adkison. (1998). Patterns of covariation in survival rates of British Columbia and Alaska sockeye salmon (Oncorhynchus nerka) stocks. Can. J. Fish. Aquat. Sci. 55:2503-2517. available from the PSC

Peterman, R.M., B.J. Pyper, M.F. Lapointe, and M.D. Adkison. (1997). Patterns of covariation in components of recruitment among sockeye salmon stocks in British Columbia and Alaska. In: R.L. Emmett and M.H. Schiewe (eds.) Estuarine and ocean survival of northeastern Pacific salmon: Proceedings of the workshop. NOAA Tech. Memo. NMFS-NWFSC 29, pp.243-247.

White, B.A. and J.B. Shaklee. (1997). Marine migration patterns and proportions of adult Fraser River pink salmon in southern British Columbia and northern Washington fisheries. In. Proceedings of the 18th Northeast Pacific Pink and Chum Salmon Workshop. Nanaimo, B.C. Department of Fisheries and Oceans. pp. 14-27.

Adkison, M.D., R.M. Peterman, M.F. Lapointe, D.M. Gillis and J. Korman. (1996). Alternative models of climatic effects on sockeye salmon productivity in Bristol Bay, Alaska, and the Fraser River, British Columbia. Fish. Oceanogr. 5:137-152.

Xie, Y and D.M. Farmer. (1995). The influence of pressure ridges on seismic signals due to thermal cracking of sea ice. J. Acoust. Soc. Am, 97(2).

Xie, Y. (1995). Acoustical tracking of ice failure process, In: M.J. Buckingham and J.R. Potter (eds.) Sea surface sounds. World Scientific. pp. 457-469.

Banneheka, S.G., R.D. Routledge, I.C. Guthrie and J.C. Woodey. (1995). Estimation of in-river fish passage using a combination of transect and stationary hydroacoustic sampling. Can. J. Fish. Aquat. Sci. 52(2): 335-343. available from the PSC

Cave, J.D. and W.J. Gazey. (1994). A pre-season simulation model for fisheries on Fraser River sockeye salmon (O. nerka). Can. J. Fish. Aquat. Sci. 51(7): 1535-1549. available from the PSC

Lapointe, M.F., R.M. Peterman, and B.J. Rothschild. (1992). Variable natural mortality rates inflate variance of recruitments estimated from virtual population analysis (VPA). Can. J. Fish. Aquat. Sci. 49: 2020-2027.

Walters, C. and J.C. Woodey. (1992). Genetic models for cyclic dominance in sockeye salmon (O. nerka). Can. J. Fish. Aquat. Sci. 49(2): 281-292.

Lapointe, M.F. and R.M. Peterman. (1991). Spurious correlations between fish recruitment and environmental factors due to errors in the natural mortality rate used in virtual population analysis (VPA). ICES J. Mar. Sci. 48:219-228.

Shaklee, J.B., D.C. Klaybor, S. Young and B.A. White. (1991). Genetic stock structure of odd-year pink salmon, O. gorbuscha (Walbaum), from Washington and British Columbia and potential mixed-stock applications. Journal of Fish Biology (1991) 39 (Supp. A): 21-34.

White, B.A. and J. Gable. (1991). In-season management of Fraser River pink salmon using GSI techniques. In B.A. White and I.C. Guthrie (eds.) Proceedings of the 15th Northeast Pacific Pink and Chum Salmon Workshop. Pacific Salmon Commission, pp. 194-200. available from the PSC

White, B.A. and I.C. Guthrie (eds.) (1991). Proceedings of the 15th Northeast Pacific Pink and Chum Salmon Workshop. Pacific Salmon Commission, 241 p. available from the PSC

White, B.A. and J.B. Shaklee. (1991). Need for replicated electrophoretic analyses in multiagency genetic stock identification (GSI) programs: examples from a pink salmon (O. gorbuscha) GSI Fisheries Study. Can. J. Fish. Aquat. Sci. 48(8): 1396-1407. available from the PSC

Woodey, J.C. (1989). Use of GSI Data in Management of Fraser River Pink Salmon. In P.A. Knudsen (ed.) Proceedings of the 14th Northeast Pacific Pink and Chum Salmon Workshop. Washington State Department of Fisheries, pp. 42-44. available from the PSC

White, B.A. (1989). Simulation analysis of GSI applications to odd-year pink salmon fishing. In P.A. Knudsen (ed.) Proceedings of the 14th Northeast Pacific Pink and Chum Salmon Workshop. Washington State Department of Fisheries, pp. 37-41. available from the PSC

Blackbourn, D.J. and M.B. Tasaka. (1989). Marine scale growth in Fraser River pink salmon: a comparison with sockeye salmon marine growth and other biological parameters. In P.A. Knudsen (ed.) Proceedings of the 14th Northeast Pacific Pink and Chum Salmon Workshop. Washington State Department of Fisheries, pp. 58-63. available from the PSC

Jensen, T.C. (1988). New international policy for north Pacific salmon. Pacific Northwest Admiralty Law Inst. Proc. Ch. IV. 1988.

Todd, I. and T.C. Jensen. (1988). Assessment of the Pacific Salmon Commissions’ first three years: disappointment and frustration – but optimism for the future. Anadromous Fish Law Memo. Lewis and Clark Law School. December 1988.

Guthrie, I.C., and R.M. Peterman. 1988. Economic evaluation of lake enrichment strategies for British Columbia sockeye salmon. North American Journal of Fisheries Management. 8(4): 442-454.

Woodey, J.C. 1987. In-season management of Fraser River sockeye salmon (Oncorhynchus nerka): meeting multiple objectives. In: H.D. Smith, L. Margolis, and C.C. Wood (eds). Sockeye salmon (Oncorhynchus nerka) population biology and future management. Can. Spec. Publ. Fish. Aquat. Sci. 96, pp. 367-374. available from the PSC

Cook, R.C. and I.C. Guthrie. 1987. In-season stock identification using scale pattern recognition. In: H.D. Smith, L. Margolis, and C.C. Wood (eds). Sockeye salmon (Oncorhynchus nerka) population biology and future management. Can. Spec. Publ. Fish. Aquat. Sci. 96, pp. 327-334.